3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13577

Details:

PFam ID : PF13577

PFam Domain Description : SnoaL-like domain

Number of Sequence in 50% Dataset : 473

Number of Sequence in Full Dataset : 983

Average sequence length: 126.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13577	D4AUD6_ARTBC_46_176	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13577	D6BC41_9ACTO_108_214	99.7

Sequence based PCA Plot of the family - PF13577 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=6 Length=31
Motif2 Start=74 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay