3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12901

Details:

PFam ID : PF12901

PFam Domain Description : SUZ-C motif

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 65

Average sequence length: 31.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12901	A7RSK2_NEMVE_422_438	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12901	D6WR35_TRICA_417_450	90.6

Sequence based PCA Plot of the family - PF12901 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=11
Motif2 Start=16 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay