3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06406

Details:

PFam ID : PF06406

PFam Domain Description : StbA protein

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 157

Average sequence length: 240.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06406	A1U810_MARAV_5_343	96.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06406	E7JDX5_ECOLX_1_56	100

Sequence based PCA Plot of the family - PF06406 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=102 Length=8
Motif2 Start=328 Length=11
Motif3 Start=301 Length=8
Motif4 Start=184 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay