3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13945

Details:

PFam ID : PF13945

PFam Domain Description : Splicing factor, salt tolerance regulator

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 73

Average sequence length: 154.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13945	A8QAV0_MALGO_388_488	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13945	C4Y6F9_CLAL4_11_220	100

Sequence based PCA Plot of the family - PF13945 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay