3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02664

Details:

PFam ID : PF02664

PFam Domain Description : S-Ribosylhomocysteinase (LuxS)

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 397

Average sequence length: 150.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02664	C6PUB6_9CLOT_1_80	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02664	A8M183_SALAI_1_147	100

Sequence based PCA Plot of the family - PF02664 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=118 Length=8
Motif2 Start=1 Length=8
Motif3 Start=52 Length=8
Motif4 Start=71 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay