3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00079

Details:

PFam ID : PF00079

PFam Domain Description : Serpin (serine protease inhibitor)

Number of Sequence in 50% Dataset : 816

Number of Sequence in Full Dataset : 1903

Average sequence length: 294.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00079	F1N398_BOVIN_2_74	86.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00079	Q98TK1_PLAFE_2_63	99.7

Sequence based PCA Plot of the family - PF00079 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=79 Length=8
Motif3 Start=103 Length=11
Motif4 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay