3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05992

Details:

PFam ID : PF05992

PFam Domain Description : SbmA/BacA-like family

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 103

Average sequence length: 265.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05992	Q9AN93_BRAJA_48_120	24.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05992	Q5CRA5_CRYPV_8_327	100

Sequence based PCA Plot of the family - PF05992 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8
Motif4 Start=56 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay