3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07366

Details:

PFam ID : PF07366

PFam Domain Description : SnoaL-like polyketide cyclase

Number of Sequence in 50% Dataset : 231

Number of Sequence in Full Dataset : 523

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07366	CA1A_CONOM_1_17	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07366	F2K423_9GAMM_3_133	100

Sequence based PCA Plot of the family - PF07366 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=93 Length=8
Motif3 Start=112 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay