3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02876

Details:

PFam ID : PF02876

PFam Domain Description : Staphylococcal/Streptococcal toxin, beta-grasp domain

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 138

Average sequence length: 92.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02876	Q007A6_STAAU_93_152	31.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02876	Q48ZD3_STRP1_1_67	98.5

Sequence based PCA Plot of the family - PF02876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay