3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03979

Details:

PFam ID : PF03979

PFam Domain Description : Sigma-70 factor, region 1.1

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 770

Average sequence length: 82.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03979	C7CAV1_METED_37_97	54.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03979	E9I6B3_DAPPU_162_270	100

Sequence based PCA Plot of the family - PF03979 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=17
Motif2 Start=1 Length=8
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay