3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12741

Details:

PFam ID : PF12741

PFam Domain Description : Susd and RagB outer membrane lipoprotein

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 293

Average sequence length: 434.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12741	B3JEP3_9BACE_9_59	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12741	E5V9W2_9BACE_403_612	100

Sequence based PCA Plot of the family - PF12741 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=139 Length=8
Motif2 Start=189 Length=8
Motif3 Start=51 Length=8
Motif4 Start=153 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay