3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03640

Details:

PFam ID : PF03640

PFam Domain Description : Secreted repeat of unknown function

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 457

Average sequence length: 45.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03640	A9EDD4_9RHOB_24_76	12.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03640	A4ADK7_9GAMM_201_245	99.1

Sequence based PCA Plot of the family - PF03640 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=11
Motif2 Start=26 Length=8
Motif3 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay