3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12913

Details:

PFam ID : PF12913

PFam Domain Description : SH3 domain of the SH3b1 type

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 110

Average sequence length: 51.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12913	D1B8Z0_THEAS_111_162	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12913	A9BFP2_PETMO_149_198	100

Sequence based PCA Plot of the family - PF12913 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay