3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07304

Details:

PFam ID : PF07304

PFam Domain Description : Steroid receptor RNA activator (SRA1)

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 118

Average sequence length: 156.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07304	C1C359_9MAXI_15_159	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07304	C4XZQ2_CLAL4_1205_1388	100

Sequence based PCA Plot of the family - PF07304 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=78 Length=8
Motif4 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay