3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02978

Details:

PFam ID : PF02978

PFam Domain Description : Signal peptide binding domain

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 1172

Average sequence length: 100.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02978	Q9SXP0_HYONI_43_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02978	E1EXA2_GIAIA_330_439	100

Sequence based PCA Plot of the family - PF02978 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=14
Motif2 Start=1 Length=11
Motif3 Start=61 Length=11
Motif4 Start=42 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay