3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07549

Details:

PFam ID : PF07549

PFam Domain Description : SecD/SecF GG Motif

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 1799

Average sequence length: 29.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07549	Q823X4_CHLCV_354_526	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07549	C9RNM1_FIBSS_47_75	98.1

Sequence based PCA Plot of the family - PF07549 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay