3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08622

Details:

PFam ID : PF08622

PFam Domain Description : Svf1-like

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 72

Average sequence length: 316.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08622	E3KDS4_PUCGT_51_473	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08622	E3KDS4_PUCGT_51_473	100

Sequence based PCA Plot of the family - PF08622 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=349 Length=8
Motif2 Start=368 Length=8
Motif3 Start=3 Length=8
Motif4 Start=155 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay