3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01380

Details:

PFam ID : PF01380

PFam Domain Description : SIS domain

Number of Sequence in 50% Dataset : 838

Number of Sequence in Full Dataset : 6831

Average sequence length: 125.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01380	D8E0E5_PREBR_123_208	53.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01380	A5L7W9_9GAMM_34_99	96.5

Sequence based PCA Plot of the family - PF01380 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=39 Length=8
Motif4 Start=12 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay