3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07780

Details:

PFam ID : PF07780

PFam Domain Description : Spb1 C-terminal domain

Number of Sequence in 50% Dataset : 37

Number of Sequence in Full Dataset : 167

Average sequence length: 242.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07780	E4X0R1_OIKDI_39_496	91.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07780	B6AK64_CRYMR_590_911	100

Sequence based PCA Plot of the family - PF07780 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=207 Length=8
Motif2 Start=149 Length=8
Motif3 Start=302 Length=8
Motif4 Start=171 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay