3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02772

Details:

PFam ID : PF02772

PFam Domain Description : S-adenosylmethionine synthetase, central domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 1351

Average sequence length: 120.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02772	METK_AMOPR_123_272	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02772	E8ZK49_MYCHL_101_222	100

Sequence based PCA Plot of the family - PF02772 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=21
Motif2 Start=6 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay