3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09631

Details:

PFam ID : PF09631

PFam Domain Description : Sen15 protein

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 71

Average sequence length: 131.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09631	E9E9C6_METAQ_18_140	17.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09631	E9E9C6_METAQ_18_140	100

Sequence based PCA Plot of the family - PF09631 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=6 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay