3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05540

Details:

PFam ID : PF05540

PFam Domain Description : Serpulina hyodysenteriae variable surface protein

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 22

Average sequence length: 346.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05540	C0QX33_BRAHW_1_436	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05540	C0QX33_BRAHW_1_436	100

Sequence based PCA Plot of the family - PF05540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=156 Length=8
Motif2 Start=26 Length=11
Motif3 Start=98 Length=8
Motif4 Start=399 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay