3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03983

Details:

PFam ID : PF03983

PFam Domain Description : SLA1 homology domain 1, SHD1

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 81

Average sequence length: 67.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03983	D5GPH2_TUBMM_270_339	82.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03983	D5GPH2_TUBMM_270_339	100

Sequence based PCA Plot of the family - PF03983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay