3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07244

Details:

PFam ID : PF07244

PFam Domain Description : Surface antigen variable number repeat

Number of Sequence in 50% Dataset : 845

Number of Sequence in Full Dataset : 3810

Average sequence length: 78.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07244	C7PMK6_CHIPD_213_342	51.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07244	A6G180_9DELT_184_245	95.7

Sequence based PCA Plot of the family - PF07244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=18
Motif3 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay