3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09578

Details:

PFam ID : PF09578

PFam Domain Description : Spore cortex protein YabQ (Spore_YabQ)

Number of Sequence in 50% Dataset : 64

Number of Sequence in Full Dataset : 138

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09578	C0B9U1_9FIRM_11_96	79.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09578	C0B9U1_9FIRM_11_96	99.2

Sequence based PCA Plot of the family - PF09578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=1 Length=18
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay