3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04855

Details:

PFam ID : PF04855

PFam Domain Description : SNF5 / SMARCB1 / INI1

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 197

Average sequence length: 197.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04855	A2FGR3_TRIVA_7_166	93.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04855	B0D476_LACBS_1145_1444	100

Sequence based PCA Plot of the family - PF04855 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=116 Length=8
Motif2 Start=8 Length=19
Motif3 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay