3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01975

Details:

PFam ID : PF01975

PFam Domain Description : Survival protein SurE

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 1057

Average sequence length: 191.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01975	F2QSA4_PICPA_16_138	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01975	A3LSW4_PICST_16_301	100

Sequence based PCA Plot of the family - PF01975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=199 Length=8
Motif2 Start=137 Length=8
Motif3 Start=3 Length=8
Motif4 Start=258 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay