3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07277

Details:

PFam ID : PF07277

PFam Domain Description : SapC

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 169

Average sequence length: 214.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07277	B4U782_HYDS0_11_227	98.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07277	Q21LA6_SACD2_7_245	100

Sequence based PCA Plot of the family - PF07277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay