3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04940

Details:

PFam ID : PF04940

PFam Domain Description : Sensors of blue-light using FAD

Number of Sequence in 50% Dataset : 140

Number of Sequence in Full Dataset : 353

Average sequence length: 92.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04940	A3JEM2_9ALTE_1_49	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04940	A0Z3A0_9GAMM_4_105	100

Sequence based PCA Plot of the family - PF04940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=43 Length=8
Motif2 Start=1 Length=8
Motif3 Start=72 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay