3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08314

Details:

PFam ID : PF08314

PFam Domain Description : Secretory pathway protein Sec39

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 120

Average sequence length: 534.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08314	B7Q887_IXOSC_973_1071	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08314	E1Z645_9CHLO_122_617	99.1

Sequence based PCA Plot of the family - PF08314 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay