3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02146

Details:

PFam ID : PF02146

PFam Domain Description : Sir2 family

Number of Sequence in 50% Dataset : 200

Number of Sequence in Full Dataset : 2016

Average sequence length: 172.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02146	C4Q3Z0_SCHMA_77_320	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02146	A7H2V7_CAMJD_70_123	100

Sequence based PCA Plot of the family - PF02146 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=181 Length=14
Motif3 Start=155 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay