3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04811

Details:

PFam ID : PF04811

PFam Domain Description : Sec23/Sec24 trunk domain

Number of Sequence in 50% Dataset : 172

Number of Sequence in Full Dataset : 573

Average sequence length: 229.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04811	A0DLP1_PARTE_45_90	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04811	F0VLT5_NEOCA_831_1126	100

Sequence based PCA Plot of the family - PF04811 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=8
Motif2 Start=1 Length=20
Motif3 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay