3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02982

Details:

PFam ID : PF02982

PFam Domain Description : Scytalone dehydratase

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 43

Average sequence length: 148.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02982	B6GWJ1_PENCW_2_142	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02982	A6SL64_BOTFB_10_171	100

Sequence based PCA Plot of the family - PF02982 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=8
Motif3 Start=21 Length=8
Motif4 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay