3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11538

Details:

PFam ID : PF11538

PFam Domain Description : Snurportin1

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 21

Average sequence length: 38.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11538	Q5D8K6_SCHJA_30_71	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11538	A7SYQ6_NEMVE_26_66	100

Sequence based PCA Plot of the family - PF11538 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay