3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04908

Details:

PFam ID : PF04908

PFam Domain Description : SH3-binding, glutamic acid-rich protein

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 109

Average sequence length: 89.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04908	E4X414_OIKDI_1_66	24

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04908	Q5DG86_SCHJA_1_96	100

Sequence based PCA Plot of the family - PF04908 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=75 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay