3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10316

Details:

PFam ID : PF10316

PFam Domain Description : Serpentine type 7TM GPCR chemoreceptor Srbc

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 195

Average sequence length: 222.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10316	A8XV17_CAEBR_18_200	81.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10316	E3LL25_CAERE_2_276	100

Sequence based PCA Plot of the family - PF10316 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay