3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08188

Details:

PFam ID : PF08188

PFam Domain Description : Spermatozal protamine family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 24

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08188	E4PSZ9_MYCLG_454_510	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08188	PRT32_HYDCO_1_48	100

Sequence based PCA Plot of the family - PF08188 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay