3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01369

Details:

PFam ID : PF01369

PFam Domain Description : Sec7 domain

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 683

Average sequence length: 181.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01369	C0SAI7_PARBP_340_396	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01369	Q4REX8_TETNG_445_515	100

Sequence based PCA Plot of the family - PF01369 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=44 Length=8
Motif3 Start=23 Length=8
Motif4 Start=137 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay