3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02118

Details:

PFam ID : PF02118

PFam Domain Description : Srg family chemoreceptor

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 227

Average sequence length: 245.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02118	Q94168_CAEEL_30_307	90.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02118	E3MV56_CAERE_9_305	100

Sequence based PCA Plot of the family - PF02118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=210 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay