3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13765

Details:

PFam ID : PF13765

PFam Domain Description : SPRY-associated domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 554

Average sequence length: 48.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13765	C4QH40_SCHMA_6730_7372	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13765	E6ZHS0_DICLA_247_298	99.8

Sequence based PCA Plot of the family - PF13765 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=42 Length=8
Motif3 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay