3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00176 Details: PFam ID : PF00176 PFam Domain Description : SNF2 family N-terminal domain Number of Sequence in 50% Dataset : 1452 Number of Sequence in Full Dataset : 6054 Average sequence length: 282.7 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00176Q0UL42_PHANO_12_9892.6 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00176F1AX80_ORFV_108_29499.9 Sequence based PCA Plot of the family - PF00176 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=24 Length=8Motif2 Start=2 Length=8Motif3 Start=349 Length=8Motif4 Start=445 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF00176
PFam Domain Description : SNF2 family N-terminal domain
Number of Sequence in 50% Dataset : 1452
Number of Sequence in Full Dataset : 6054
Average sequence length: 282.7
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER