Home Browse Search Download Help Group

3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00176
Details:

PFam ID : PF00176

PFam Domain Description : SNF2 family N-terminal domain

Number of Sequence in 50% Dataset : 1452

Number of Sequence in Full Dataset : 6054

Average sequence length: 282.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00176Q0UL42_PHANO_12_9892.6
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF00176F1AX80_ORFV_108_29499.9
Sequence based PCA Plot of the family - PF00176 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=24 Length=8
Motif2 Start=2 Length=8
Motif3 Start=349 Length=8
Motif4 Start=445 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay