3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08616

Details:

PFam ID : PF08616

PFam Domain Description : Stabilisation of polarity axis

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 129

Average sequence length: 110.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08616	A7TRE4_VANPO_376_503	53.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08616	A0C6F7_PARTE_251_368	100

Sequence based PCA Plot of the family - PF08616 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay