3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13289

Details:

PFam ID : PF13289

PFam Domain Description : SIR2-like domain

Number of Sequence in 50% Dataset : 360

Number of Sequence in Full Dataset : 801

Average sequence length: 154.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13289	D0WPM1_9ACTO_1_91	96.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13289	Q47G64_DECAR_108_264	100

Sequence based PCA Plot of the family - PF13289 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=73 Length=8
Motif2 Start=58 Length=8
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay