3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13607

Details:

PFam ID : PF13607

PFam Domain Description : Succinyl-CoA ligase like flavodoxin domain

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 868

Average sequence length: 135.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13607	D7FSU4_ECTSI_139_167	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13607	A8B3P9_GIAIC_573_732	100

Sequence based PCA Plot of the family - PF13607 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=152 Length=8
Motif2 Start=137 Length=11
Motif3 Start=31 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay