3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12929

Details:

PFam ID : PF12929

PFam Domain Description : Stretch-activated Ca2+-permeable channel component

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 77

Average sequence length: 367.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12929	A7SN58_NEMVE_63_145	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12929	Q5C338_SCHJA_146_227	100

Sequence based PCA Plot of the family - PF12929 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=65 Length=14
Motif2 Start=2 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay