3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08396

Details:

PFam ID : PF08396

PFam Domain Description : Spider toxin omega agatoxin/Tx1 family

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 24

Average sequence length: 47.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08396	TOG1A_AGEAP_39_110	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08396	TOG1A_AGEAP_39_110	95.6

Sequence based PCA Plot of the family - PF08396 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay