3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08824

Details:

PFam ID : PF08824

PFam Domain Description : Serine rich protein interaction domain

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 42

Average sequence length: 148.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08824	B3RIR6_TRIAD_443_599	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08824	E0VL44_PEDHC_247_406	100

Sequence based PCA Plot of the family - PF08824 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay