3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06214

Details:

PFam ID : PF06214

PFam Domain Description : Signaling lymphocytic activation molecule (SLAM) protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 14

Average sequence length: 109.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06214	D3RWF9_ALLVD_3_301	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06214	D2I008_AILME_1_102	100

Sequence based PCA Plot of the family - PF06214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay