3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04486

Details:

PFam ID : PF04486

PFam Domain Description : SchA/CurD like domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 61

Average sequence length: 107.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04486	E4NJ49_KITSK_266_358	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04486	E5RLP3_9ACTO_1_121	100

Sequence based PCA Plot of the family - PF04486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay