3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05482

Details:

PFam ID : PF05482

PFam Domain Description : Serendipity locus alpha protein (SRY-A)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 31

Average sequence length: 485.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05482	C1B5A7_RHOOB_8_174	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05482	B7U9L9_CERCA_6_508	100

Sequence based PCA Plot of the family - PF05482 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=352 Length=8
Motif2 Start=298 Length=8
Motif3 Start=26 Length=8
Motif4 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay